MolNFT v1 · #168361 · protein + DNA
Wheat dwarf virus rep domain complexed with a single-stranded DNA 10- mer comprising the cleavage site
6WE0 · Replication-associated protein: “Wheat dwarf virus rep domain complexed with a single-stranded DNA 10- mer comprising the cleavage site”. X-ray diffraction, 1 ligand (MN). MolNFT v1 #168361 on GenesisL1: 3D structure, binding sites…
- PDB
- 6WE0
- Type
- protein + DNA
- Length
- 129 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Replication-associated protein; DNA (5'-D(*TP*AP*AP*TP*AP*TP*TP*AP*CP*C)-3')
- EC
- 3.1.21.-
- UniProt
- A7KQY4
- Ligands
- MN
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Replication-associated protein (EC 3.1.21.-) | protein | 119 | 24% helix, 39% strand | A7KQY4 |
| C | DNA (5'-D(*TP*AP*AP*TP*AP*TP*TP*AP*CP*C)-3') | dna | 10 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 4 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–C · 950 Ų buried · 23 hydrogen bonds · protein-nucleic
Compared structures
- 6WE0 · Wheat dwarf virus Rep domain complexed with a single-stranded DNA 10-mer comprising the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7KQY4
- Elsewhere: RCSB PDB 6WE0 · PDBe 6WE0 · UniProt A7KQY4
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