MolNFT v1 · #168360 · protein + DNA
Porcine circovirus 2 rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site
6WDZ: “Porcine circovirus 2 rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site”. X-ray diffraction, 1 ligand (MN). MolNFT v1 #168360 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WDZ
- Type
- protein + DNA
- Length
- 336 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A060L113
- Ligands
- MN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, I, F | — | dna | 10 | — | — |
| D | — | protein | 102 | — | A0A060L113 |
| G | — | protein | 99 | — | A0A060L113 |
| J | — | dna | 4 | — | — |
| A | — | protein | 101 | — | A0A060L113 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 3 copies · chains D, F, I, G, C, A
- EDO · 1,2-ethanediol · additive · 2 copies · chains I, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WDZ · Porcine circovirus 2 Rep domain complexed with a single-stranded DNA 10-mer comprising… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A060L113
- Elsewhere: RCSB PDB 6WDZ · PDBe 6WDZ · UniProt A0A060L113
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