MolNFT v1 · #16827 · protein
Ascobate peroxidase from soybean cytosol in complex with ascorbate
1OAF · Ascorbate peroxidase: “Ascobate peroxidase from soybean cytosol in complex with ascorbate”. X-ray diffraction, 3 ligands (HEM, ASC, NA), 2 pockets (best druggability 0.78). MolNFT v1 #16827 on GenesisL1: 3D structure, binding sites…
- PDB
- 1OAF
- Type
- protein
- Length
- 250 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ascorbate peroxidase
- EC
- 1.11.1.11
- UniProt
- Q43758
- Ligands
- HEM, ASC, NA
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ascorbate peroxidase (EC 1.11.1.11) | protein | 250 | 54% helix, 2% strand | Q43758 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- ASC · Ascorbic acid · ligand · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 384 | 0.78 | 0.87 | 43 | HEM, ASC |
| 2 | 54 | 0.26 | 0.74 | 17 | empty |
Compared structures
- 1OAF · Ascobate peroxidase from soybean cytosol in complex with ascorbate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q43758
- Elsewhere: RCSB PDB 1OAF · PDBe 1OAF · UniProt Q43758
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