MolNFT v1 · #16826 · protein
Crystal structure of the reduced form of cytochrome C" from methylophilus methylotrophus
1OAE: “Crystal structure of the reduced form of cytochrome C" from methylophilus methylotrophus”. X-ray diffraction, 2 ligands (HEC, SO4), 1 pocket (best druggability 0.82). MolNFT v1 #16826 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1OAE
- Type
- protein
- Length
- 248 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C"
- UniProt
- Q9RQB9
- Ligands
- HEC, SO4
- Pockets
- 1 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cytochrome C" | protein | 124 | 48% helix, 6% strand | Q9RQB9 |
Ligands and binding sites
- HEC · Heme C · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 6 copies · chains A, B
- GOL · Glycerol · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 967 | 0.82 | 0.83 | 93 | HEC, GOL, SO4 |
Interfaces
1 interface between chains.
- A–B · 650 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor (heme c attachment).
Compared structures
- 1OAE · Crystal structure of the reduced form of cytochrome c" from Methylophilus methylotrophus · the same entry in another collection · chain A against A, TM-score 1.00
- Q9RQB9 · AlphaFold monomer V2.0 prediction for cytochrome C'' (Q9RQB9) · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RQB9
- Elsewhere: RCSB PDB 1OAE · PDBe 1OAE · UniProt Q9RQB9
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