MolNFT v1 · #168244 · protein
De novo designed receptor transmembrane domains enhance car-T cytotoxicity and attenuate cytokine release
6WA0 · De novo designed receptor transmembrane domain promp C3.1: “De novo designed receptor transmembrane domains enhance car-T cytotoxicity and attenuate cytokine release”. X-ray diffraction, 2 pockets (best druggability 0.52). MolNFT v1…
- PDB
- 6WA0
- Type
- protein
- Length
- 268 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- De novo designed receptor transmembrane domain promp C3.1
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 5 distinct chains · 89% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | De novo designed receptor transmembrane domain promp C3.1 | protein | 28 | 93% helix, 0% strand | — |
| B, E, H, I | De novo designed receptor transmembrane domain promp C3.1 | protein | 31 | 87% helix, 0% strand | — |
| C | De novo designed receptor transmembrane domain promp C3.1 | protein | 30 | 83% helix, 0% strand | — |
| D, F | De novo designed receptor transmembrane domain promp C3.1 | protein | 29 | 90% helix, 0% strand | — |
| G | De novo designed receptor transmembrane domain promp C3.1 | protein | 28 | 93% helix, 0% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 229 | 0.52 | 0.75 | 29 | empty |
| 2 | 92 | 0.39 | 0.76 | 16 | empty |
Interfaces
14 interfaces between chains.
- A–G · 686 Ų buried · 4 hydrogen bonds · protein-protein
- D–E · 648 Ų buried · 0 hydrogen bonds · protein-protein
- D–F · 640 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 619 Ų buried · 0 hydrogen bonds · protein-protein
- B–E · 612 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (methylation).
Compared structures
- 6WA0 · De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6WA0 · PDBe 6WA0
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