MolNFT v1 · #168234 · protein
Peptide-bound SARS-cov-2 NSP9 RNA-replicase
6W9Q · 3C-like proteinase peptide, non-structural protein 9 fusion: “Peptide-bound SARS-cov-2 NSP9 RNA-replicase”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.30). MolNFT v1 #168234 on GenesisL1: 3D structure, binding…
- PDB
- 6W9Q
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3C-like proteinase peptide, non-structural protein 9 fusion
- UniProt
- P0DTD1
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3C-like proteinase peptide, non-structural protein 9 fusion | protein | 123 | 12% helix, 50% strand | P0DTD1 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.30 | 0.74 | 11 | empty |
Compared structures
- 6W9Q · Peptide-bound SARS-CoV-2 Nsp9 RNA-replicase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 6W9Q · PDBe 6W9Q · UniProt P0DTD1
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