MolNFT v1 · #168196 · protein

Crystal structure analysis of space-grown lysozyme

6W8E: “Crystal structure analysis of space-grown lysozyme”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.31). MolNFT v1 #168196 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6W8E
Type: protein
Length: 118 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme
EC: 3.2.1.17
UniProt: B8YK79
Ligands: CL
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme (EC 3.2.1.17)	protein	118	42% helix, 8% strand	B8YK79

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.31	0.77	12	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6W8E · Crystal Structure Analysis of Space-grown Lysozyme · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B8YK79
Elsewhere: RCSB PDB 6W8E · PDBe 6W8E · UniProt B8YK79

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