MolNFT v1 · #168074 · protein
Co-crystal structure of PD_DINASE with probe glycine-propargylglycine- aomk
6W4N: “Co-crystal structure of PD_DINASE with probe glycine-propargylglycine- aomk”. X-ray diffraction, 2 ligands (SWJ, K). MolNFT v1 #168074 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6W4N
- Type
- protein
- Length
- 2,124 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A395YY96
- Ligands
- SWJ, K
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 347 | — | A0A395YY96 |
| B | — | protein | 350 | — | A0A395YY96 |
| C | — | protein | 347 | — | A0A395YY96 |
| D | — | protein | 351 | — | A0A395YY96 |
| E | — | protein | 366 | — | A0A395YY96 |
| F | — | protein | 363 | — | A0A395YY96 |
Ligands and binding sites
- SWJ · 2-azanyl-~{N}-[(3~{S})-2-oxidanylidenehex-5-yn-3-yl]ethanamide · ligand · 6 copies · chains A, B, C, D, E, F
- K · Potassium ion · metal · 12 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6W4N · Co-crystal structure of Pd_dinase with probe glycine-propargylglycine-AOMK · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A395YY96
- Elsewhere: RCSB PDB 6W4N · PDBe 6W4N · UniProt A0A395YY96
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