MolNFT v1 · #167968 · protein

Crystal structure of tRNA (guanine-N(1)-)-methyltransferase with bound sah from mycobacterium smegmatis

6W15: “Crystal structure of tRNA (guanine-N(1)-)-methyltransferase with bound sah from mycobacterium smegmatis”. X-ray diffraction, 1 ligand (SAH), 1 pocket (best druggability 0.57). MolNFT v1 #167968 on GenesisL1: 3D structure, binding…

PDB: 6W15
Type: protein
Length: 202 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA (guanine-N(1)-)-methyltransferase
EC: 2.1.1.228
UniProt: I7FBD0
Ligands: SAH
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.228)	protein	202	39% helix, 22% strand	I7FBD0

Ligands and binding sites

SAH · S-adenosyl-L-homocysteine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.57	0.82	32	SAH

Compared structures

6W15 · Crystal structure of tRNA (guanine-N(1)-)-methyltransferase with bound SAH from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I7FBD0
Elsewhere: RCSB PDB 6W15 · PDBe 6W15 · UniProt I7FBD0

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