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MolNFT v1 · #167960 · protein

Structure of khk in complex with compound 4 (6-[(1~{S},5~{R})-6- (hydroxymethyl)-3-AZABICYCLO[3.1.0]HEXAN-3-yl]-2-[(2~{S},3~{R})-2- methyl-3-oxidanyl-azetidin-1-yl]-4-(TRIFLUOROMETHYL)PYRIDINE-3- carbonitrile)

6W0X: “Structure of khk in complex with compound 4 (6-[(1~{S},5~{R})-6…”. X-ray diffraction, 2 ligands (S6J, SO4). MolNFT v1 #167960 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6W0X
Type
protein
Length
597 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P50053
Ligands
S6J, SO4

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein296—P50053
B—protein301—P50053

Ligands and binding sites

  • S6J · 6-[(1~{S},5~{R})-6-(hydroxymethyl)-3-azabicyclo[3.1.0]hexan-3-yl]-2-[(2~{S},3~{R})-2-methyl-3-oxidanyl-azetidin-1-yl]-4-(trifluoromethyl) pyridine-3-carbonitrile · ligand · 2 copies · chains A, B
  • SO4 · Sulfate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6W0X · Structure of KHK in complex with compound 4 (6-[(1~{S},5~{R})-6-(hydroxymethyl)-3-azabicyc… · the same entry in another collection · chain A against A, TM-score 1.00
  • P50053 · AlphaFold monomer V2.0 prediction for ketohexokinase (P50053) · a predicted model of the same protein · chain A against A, TM-score 0.99

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