MolNFT v1 · #167931 · protein

Crystal structure of had hydrolase, family ia, variant 3 from entamoeba histolytica hm-1:IMSS

6W04: “Crystal structure of had hydrolase, family ia, variant 3 from entamoeba histolytica hm-1:IMSS”. X-ray diffraction, 2 ligands (MG, SO4), 1 pocket (best druggability 0.72). MolNFT v1 #167931 on GenesisL1: 3D structure, binding sites…

PDB: 6W04
Type: protein
Length: 223 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Had hydrolase, family ia, variant 3
EC: 3.-.-.-
UniProt: C4LXK0
Ligands: MG, SO4
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Had hydrolase, family ia, variant 3 (EC 3.-.-.-)	protein	223	54% helix, 13% strand	C4LXK0

Ligands and binding sites

MG · Magnesium ion · metal · chains A
SO4 · Sulfate ion · ion · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	549	0.72	0.81	47	MG, EDO, SO4

Compared structures

6W04 · Crystal structure of HAD hydrolase, family IA, variant 3 from Entamoeba histolytica… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C4LXK0
Elsewhere: RCSB PDB 6W04 · PDBe 6W04 · UniProt C4LXK0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.