MolNFT v1 · #167910 · protein
Crystal structure of HIV-1 CAP256 rns-3MUT-2G-SOSIP.664 prefusion env trimer in complex with human antibodies 3H109L and 35O22 at 3.5 ångström
6VZI: “Crystal structure of HIV-1 CAP256 rns-3MUT-2G-SOSIP.664 prefusion env trimer in complex with human antibodies…”. X-ray diffraction, 3 ligands (NAG, MAN, BMA). MolNFT v1 #167910 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6VZI
- Type
- protein
- Length
- 1,215 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- W6ICH7, A0A0N9FF17
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 120 | — | W6ICH7 |
| D | — | protein | 128 | — | — |
| E | — | protein | 107 | — | — |
| G | — | protein | 423 | — | A0A0N9FF17 |
| H | — | protein | 226 | — | — |
| L | — | protein | 211 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 22 copies · chains B, D, G, L, H
- MAN · alpha-D-mannopyranose · sugar · 10 copies · chains D, E, H, L
- BMA · beta-D-mannopyranose · sugar · 4 copies · chains D, E, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VZI · Crystal Structure of HIV-1 CAP256 RnS-3mut-2G-SOSIP.664 Prefusion Env Trimer in Complex… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W6ICH7
- Every structure of UniProt A0A0N9FF17
- Elsewhere: RCSB PDB 6VZI · PDBe 6VZI · UniProt W6ICH7 · UniProt A0A0N9FF17
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.