MolNFT v1 · #167814 · protein
Formate dehydrogenase fdsabg subcomplex fdsbg from C. necator
6VW8: “Formate dehydrogenase fdsabg subcomplex fdsbg from C. necator”. X-ray diffraction, 5 ligands (FES, FMN, SF4). MolNFT v1 #167814 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VW8
- Type
- protein
- Length
- 1,330 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q0KDY3, Q0KDY2
- Ligands
- FES, FMN, SF4, K, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 151 | — | Q0KDY3 |
| B | — | protein | 513 | — | Q0KDY2 |
| C | — | protein | 152 | — | Q0KDY3 |
| D | — | protein | 514 | — | Q0KDY2 |
Ligands and binding sites
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B, C, D
- FMN · Flavin mononucleotide · ligand · 2 copies · chains B, D
- SF4 · Iron/sulfur cluster · ligand · 2 copies · chains B, D
- K · Potassium ion · metal · 2 copies · chains A, C
- SO4 · Sulfate ion · ion · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VW8 · Formate Dehydrogenase FdsABG subcomplex FdsBG from C. necator · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0KDY3
- Every structure of UniProt Q0KDY2
- Elsewhere: RCSB PDB 6VW8 · PDBe 6VW8 · UniProt Q0KDY3 · UniProt Q0KDY2
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