MolNFT v1 · #167793 · protein
Scabin (Y129H) toxin from streptomyces scabies
6VVF: “Scabin (Y129H) toxin from streptomyces scabies”. X-ray diffraction, 2 pockets (best druggability 0.59). MolNFT v1 #167793 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VVF
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Scabin
- UniProt
- C9Z6T8
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Scabin | protein | 165 | 19% helix, 24% strand | C9Z6T8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 226 | 0.59 | 0.80 | 31 | empty |
| 2 | 58 | 0.39 | 0.80 | 19 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6VVF · Scabin (Y129H) toxin from Streptomyces scabies · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C9Z6T8
- Elsewhere: RCSB PDB 6VVF · PDBe 6VVF · UniProt C9Z6T8
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