MolNFT v1 · #167790 · protein
Legionella pneumophila LPG2603 kinase
6VVC · DOT/ICM T4SS effector: “Legionella pneumophila LPG2603 kinase”. X-ray diffraction, 2 pockets (best druggability 0.48). MolNFT v1 #167790 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VVC
- Type
- protein
- Length
- 271 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DOT/ICM T4SS effector
- EC
- 2.7.-.-
- UniProt
- A0A2S6F2W2
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DOT/ICM T4SS effector (EC 2.7.-.-) | protein | 271 | 44% helix, 17% strand | A0A2S6F2W2 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.48 | 0.78 | 29 | empty |
| 2 | 112 | 0.42 | 0.77 | 21 | empty |
Compared structures
- 6VVC · Legionella pneumophila Lpg2603 kinase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2S6F2W2
- Elsewhere: RCSB PDB 6VVC · PDBe 6VVC · UniProt A0A2S6F2W2
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