MolNFT v1 · #167761 · RNA
Apo PREQ1 riboswitch aptamer grown in MN2+
6VUH: “Apo PREQ1 riboswitch aptamer grown in MN2+”. X-ray diffraction, 1 ligand (MN), 2 pockets (best druggability 0.28). MolNFT v1 #167761 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VUH
- Type
- RNA
- Length
- 33 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PREQ1 riboswitch
- Ligands
- MN
- Pockets
- 2 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PREQ1 riboswitch | rna | 33 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.28 | 0.74 | 8 | empty |
| 2 | 58 | 0.24 | 0.72 | 13 | MN |
Compared structures
- 6VUH · APO PreQ1 riboswitch aptamer grown in Mn2+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6VUH · PDBe 6VUH
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