MolNFT v1 · #167753 · protein
Crystal structure of threonyl-tRNA synthetase (thrrs) from stenotrophomonas maltophilia K279A
6VU9 · Threonine--tRNA ligase: “Crystal structure of threonyl-tRNA synthetase (thrrs) from stenotrophomonas maltophilia K279A”. X-ray diffraction, 2 ligands (ZN, SO4), 4 pockets (best druggability 0.64). MolNFT v1 #167753 on GenesisL1: 3D…
- PDB
- 6VU9
- Type
- protein
- Length
- 631 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Threonine--tRNA ligase
- EC
- 6.1.1.3
- UniProt
- B2FN79
- Ligands
- ZN, SO4
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Threonine--tRNA ligase (EC 6.1.1.3) | protein | 631 | 37% helix, 29% strand | B2FN79 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 394 | 0.64 | 0.79 | 37 | ZN |
| 2 | 83 | 0.35 | 0.75 | 20 | empty |
| 3 | 50 | 0.30 | 0.77 | 20 | empty |
| 4 | 63 | 0.28 | 0.73 | 19 | empty |
Compared structures
- 6VU9 · Crystal structure of threonyl-tRNA synthetase (ThrRS) from Stenotrophomonas maltophilia… · the same entry in another collection · chain A against A, TM-score 1.00
- B2FN79 · AlphaFold monomer V2.0 prediction for threonine--tRNA ligase (B2FN79) · a predicted model of the same protein · chain A against A, TM-score 0.65
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2FN79
- Elsewhere: RCSB PDB 6VU9 · PDBe 6VU9 · UniProt B2FN79
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