MolNFT v1 · #167700 · protein
Denguev-2 capsid structure
6VSO: “Denguev-2 capsid structure”. X-ray diffraction, 1 ligand (NO3). MolNFT v1 #167700 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VSO
- Type
- protein
- Length
- 464 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A2D2BF61
- Ligands
- NO3
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 77 | — | A0A2D2BF61 |
| B | — | protein | 78 | — | A0A2D2BF61 |
| C, E | — | protein | 76 | — | A0A2D2BF61 |
| D | — | protein | 78 | — | A0A2D2BF61 |
| F | — | protein | 79 | — | A0A2D2BF61 |
Ligands and binding sites
- NO3 · Nitrate ion · ion · 20 copies · chains A, B, D, C, E, F
- GOL · Glycerol · additive · 3 copies · chains E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VSO · DengueV-2 Capsid Structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2D2BF61
- Elsewhere: RCSB PDB 6VSO · PDBe 6VSO · UniProt A0A2D2BF61
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