MolNFT v1 · #167687 · protein
Single particle reconstruction of hemq from geobacillus based on data acquired in the presence of substantial aberrations
6VSA: “Single particle reconstruction of hemq from geobacillus based on data acquired in the presence of substantial…”. Electron microscopy, 20 pockets (best druggability 0.67). MolNFT v1 #167687 on GenesisL1: 3D structure, binding sites…
- PDB
- 6VSA
- Type
- protein
- Length
- 1,175 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemq
- EC
- 1.11.1.-
- UniProt
- A0A0E0TGF4
- Pockets
- 20 · best druggability 0.67
Structure
electron microscopy · 1 distinct chain · 40% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| V, W, X, Y, Z | Hemq (EC 1.11.1.-) | protein | 235 | 40% helix, 31% strand | A0A0E0TGF4 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 587 | 0.67 | 0.76 | 36 | empty |
| 2 | 508 | 0.66 | 0.77 | 37 | empty |
| 3 | 519 | 0.65 | 0.77 | 42 | empty |
| 4 | 558 | 0.65 | 0.76 | 41 | empty |
| 5 | 503 | 0.64 | 0.76 | 39 | empty |
Interfaces
5 interfaces between chains.
- X–Y · 1759 Ų buried · 31 hydrogen bonds · protein-protein
- V–W · 1756 Ų buried · 30 hydrogen bonds · protein-protein
- X–Z · 1754 Ų buried · 30 hydrogen bonds · protein-protein
- W–Y · 1750 Ų buried · 31 hydrogen bonds · protein-protein
- V–Z · 1750 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 6VSA · Single particle reconstruction of HemQ from Geobacillus based on data acquired in the… · the same entry in another collection · chain V against V, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0E0TGF4
- Elsewhere: RCSB PDB 6VSA · PDBe 6VSA · UniProt A0A0E0TGF4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.