MolNFT v1 · #167675 · protein
Structure of NCI09 Fab in complex with SIV V2 peptide
6VRY: “Structure of NCI09 Fab in complex with SIV V2 peptide”. X-ray diffraction, 3 ligands (NAG, BMA, FUC). MolNFT v1 #167675 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VRY
- Type
- protein
- Length
- 450 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P08810
- Ligands
- NAG, BMA, FUC
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 214 | — | — |
| G | — | protein | 11 | — | P08810 |
| H | — | protein | 225 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains L
- BMA · beta-D-mannopyranose · sugar
- FUC · alpha-L-fucopyranose · sugar · chains L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VRY · Structure of NCI09 fab in complex with SIV V2 peptide · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08810
- Elsewhere: RCSB PDB 6VRY · PDBe 6VRY · UniProt P08810
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