MolNFT v1 · #167611 · protein
Crystal structure of epiphyas postvittana pheromone binding protein 3
6VQ5 · Pheromome binding protein: “Crystal structure of epiphyas postvittana pheromone binding protein 3”. X-ray diffraction, 1 pocket (best druggability 0.86). MolNFT v1 #167611 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6VQ5
- Type
- protein
- Length
- 230 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pheromome binding protein
- UniProt
- A0A0K8TU48
- Pockets
- 1 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 66% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pheromome binding protein | protein | 113 | 67% helix, 0% strand | A0A0K8TU48 |
| B | Pheromome binding protein | protein | 117 | 65% helix, 2% strand | A0A0K8TU48 |
Ligands and binding sites
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1189 | 0.86 | 0.86 | 73 | PG0 |
Interfaces
1 interface between chains.
- A–B · 508 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 6VQ5 · Crystal Structure of Epiphyas postvittana Pheromone Binding Protein 3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0K8TU48
- Elsewhere: RCSB PDB 6VQ5 · PDBe 6VQ5 · UniProt A0A0K8TU48
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