MolNFT v1 · #167587 · protein + DNA + RNA
Structure of the SPCAS9 DNA adenine base editor - ABE8E
6VPC: “Structure of the SPCAS9 DNA adenine base editor - ABE8E”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #167587 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VPC
- Type
- protein + DNA + RNA
- Length
- 1,786 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A4U7H5M9
- Ligands
- MG, ZN
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 81 | — | — |
| B | — | protein | 1332 | — | A0A4U7H5M9 |
| C | — | dna | 40 | — | — |
| D | — | dna | 32 | — | — |
| E | — | protein | 145 | — | — |
| F | — | protein | 156 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains E, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VPC · Structure of the SpCas9 DNA adenine base editor - ABE8e · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A4U7H5M9
- Elsewhere: RCSB PDB 6VPC · PDBe 6VPC · UniProt A0A4U7H5M9
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