MolNFT v1 · #167547 · protein
X-ray structure of the CJ1427 in the presence of NADH and GDP-D- glycero-D-mannoheptose, an essential NAD-dependent dehydrogenase from campylobacter jejuni
6VO8: “X-ray structure of the CJ1427 in the presence of NADH and GDP-D- glycero-D-mannoheptose, an essential…”. X-ray diffraction, 2 ligands (NAI, GZ0). MolNFT v1 #167547 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VO8
- Type
- protein
- Length
- 602 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q0P8I7
- Ligands
- NAI, GZ0
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 303 | — | Q0P8I7 |
| B | — | protein | 299 | — | Q0P8I7 |
Ligands and binding sites
- NAI · 1,4-dihydronicotinamide adenine dinucleotide · ligand · 2 copies · chains A, B
- GZ0 · [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl) oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R}, 3~{S},4~{S},5~{S},6~{S})-6-[(1~{S})-1,2-bis(oxidanyl) ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VO8 · X-ray structure of the Cj1427 in the presence of NADH and GDP-D-glycero-D-mannoheptose… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0P8I7
- Elsewhere: RCSB PDB 6VO8 · PDBe 6VO8 · UniProt Q0P8I7
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