MolNFT v1 · #167542 · protein
AMC009 SOSIP.V4.2 in complex with PGV04 Fab
6VO3: “AMC009 SOSIP.V4.2 in complex with PGV04 Fab”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #167542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VO3
- Type
- protein
- Length
- 2,334 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H, G, I | — | protein | 125 | — | — |
| L, J, K | — | protein | 100 | — | — |
| A, C, D | — | protein | 429 | — | — |
| B, E, F | — | protein | 124 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 60 copies · chains A, L, H, B, C, J, G, E, D, K, I, F
- BMA · beta-D-mannopyranose · sugar · 12 copies
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains L, J, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VO3 · AMC009 SOSIP.v4.2 in complex with PGV04 Fab · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6VO3 · PDBe 6VO3
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