MolNFT v1 · #167491 · protein
Chloroplast ATP synthase (C1, CF1)
6VMD: “Chloroplast ATP synthase (C1, CF1)”. Electron microscopy, 2 ligands (ATP, ADP). MolNFT v1 #167491 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VMD
- Type
- protein
- Length
- 3,576 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P06450, P00825, P11402, P00833, P05435
- Ligands
- ATP, ADP
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 501 | — | P06450 |
| B | — | protein | 503 | — | P06450 |
| C | — | protein | 500 | — | P06450 |
| D | — | protein | 478 | — | P00825 |
| E | — | protein | 481 | — | P00825 |
| F | — | protein | 480 | — | P00825 |
| d | — | protein | 179 | — | P11402 |
| e | — | protein | 131 | — | P00833 |
| g | — | protein | 323 | — | P05435 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, D, B, E, C, F
- ADP · Adenosine-5'-diphosphate · ligand · chains A, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VMD · Chloroplast ATP synthase (C1, CF1) · the same entry in another collection · chain g against g, TM-score 1.00
- P06450 · AlphaFold monomer V2.0 prediction for ATP synthase subunit alpha, chloroplastic (P06450) · a predicted model of the same protein · chain C against A, TM-score 0.97
- P00825 · AlphaFold monomer V2.0 prediction for ATP synthase subunit beta, chloroplastic (P00825) · a predicted model of the same protein · chain E against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06450
- Every structure of UniProt P00825
- Every structure of UniProt P11402
- Every structure of UniProt P00833
- Every structure of UniProt P05435
- Elsewhere: RCSB PDB 6VMD · PDBe 6VMD · UniProt P06450 · UniProt P00825 · UniProt P11402 · UniProt P00833 · UniProt P05435
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