MolNFT v1 · #167479 · protein
Chloroplast ATP synthase (C3, CF1FO)
6VM1 · ATP synthase subunit alpha, chloroplastic: “Chloroplast ATP synthase (C3, CF1FO)”. Electron microscopy, 20 pockets (best druggability 0.86). MolNFT v1 #167479 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VM1
- Type
- protein
- Length
- 5,161 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP synthase subunit alpha, chloroplastic; ATP synthase subunit beta, chloroplastic; ATP…
- EC
- 7.1.2.2
- UniProt
- P06450, P00825, P06453, P31853, P06451, P11402, P00833, P05435, P69447
- Pockets
- 20 · best druggability 0.86
Structure
electron microscopy · 13 distinct chains · 46% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) | protein | 495 | 43% helix, 12% strand | P06450 |
| B | ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) | protein | 498 | 37% helix, 14% strand | P06450 |
| C | ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) | protein | 501 | 37% helix, 14% strand | P06450 |
| D | ATP synthase subunit beta, chloroplastic (EC 7.1.2.2) | protein | 480 | 37% helix, 15% strand | P00825 |
| E | ATP synthase subunit beta, chloroplastic (EC 7.1.2.2) | protein | 478 | 37% helix, 11% strand | P00825 |
| F | ATP synthase subunit beta, chloroplastic (EC 7.1.2.2) | protein | 479 | 36% helix, 13% strand | P00825 |
| I | ATP synthase subunit B, chloroplastic | protein | 148 | 97% helix, 0% strand | P06453 |
| J | ATP synthase subunit B', chloroplastic | protein | 131 | 94% helix, 0% strand | P31853 |
| a | ATP synthase subunit a, chloroplastic | protein | 223 | 67% helix, 0% strand | P06451 |
| d | ATP synthase delta chain, chloroplastic | protein | 177 | 59% helix, 9% strand | P11402 |
| e | ATP synthase epsilon chain, chloroplastic | protein | 129 | 27% helix, 25% strand | P00833 |
| g | ATP synthase gamma chain, chloroplastic | protein | 316 | 52% helix, 11% strand | P05435 |
| R, Q, P, O, N, M, Z, Y, X, W, V, U, T, S | ATP synthase subunit C, chloroplastic | protein | 79 | 87% helix, 0% strand | P69447 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 651 | 0.86 | 0.90 | 151 | empty |
| 2 | 902 | 0.85 | 0.87 | 168 | empty |
| 3 | 661 | 0.83 | 0.87 | 135 | empty |
| 4 | 784 | 0.83 | 0.86 | 143 | empty |
| 5 | 949 | 0.82 | 0.84 | 119 | empty |
Interfaces
45 interfaces between chains.
- I–J · 1031 Ų buried · 0 hydrogen bonds · protein-protein
- R–S · 913 Ų buried · 2 hydrogen bonds · protein-protein
- U–T · 895 Ų buried · 3 hydrogen bonds · protein-protein
- Q–P · 829 Ų buried · 0 hydrogen bonds · protein-protein
- M–Z · 821 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6VM1 · Chloroplast ATP synthase (C3, CF1FO) · the same entry in another collection · chain a against a, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06450
- Every structure of UniProt P00825
- Every structure of UniProt P06453
- Every structure of UniProt P31853
- Every structure of UniProt P06451
- Every structure of UniProt P11402
- Every structure of UniProt P00833
- Every structure of UniProt P05435
- Every structure of UniProt P69447
- Elsewhere: RCSB PDB 6VM1 · PDBe 6VM1 · UniProt P06450 · UniProt P00825 · UniProt P06453 · UniProt P31853 · UniProt P06451 · UniProt P11402 · UniProt P00833 · UniProt P05435 · UniProt P69447
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