MolNFT v1 · #167451 · protein
Anti-peg antibody 6-3 Fab fragment in complex with peg
6VL8: “Anti-peg antibody 6-3 Fab fragment in complex with peg”. X-ray diffraction, 1 ligand (PEU). MolNFT v1 #167451 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VL8
- Type
- protein
- Length
- 1,710 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- PEU
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, H | — | protein | 209 | — | — |
| B, D, F, L | — | protein | 218 | — | — |
| C | — | protein | 209 | — | — |
| E | — | protein | 211 | — | — |
Ligands and binding sites
- PEU · 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56, 59,62,65,68,71,74,77,80-heptacosaoxadooctacontan-82-ol · ligand · 2 copies · chains C, D, H, L, A, B, E, F
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B, D, L, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VL8 · Anti-PEG antibody 6-3 Fab fragment in complex with PEG · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6VL8 · PDBe 6VL8
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