MolNFT v1 · #167448 · protein
BG505 sosip reconstructed from a designed tetrahedral nanoparticle, BG505 sosip-T33_DN2
6VL5: “BG505 sosip reconstructed from a designed tetrahedral nanoparticle, BG505 sosip-T33_DN2”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #167448 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VL5
- Type
- protein
- Length
- 1,719 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, A, E | — | protein | 448 | — | — |
| D, B, F | — | protein | 125 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 96 copies · chains C, A, D, E, B, F
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains C, A, E
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VL5 · BG505 SOSIP reconstructed from a designed tetrahedral nanoparticle, BG505 SOSIP-T33_dn2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6VL5 · PDBe 6VL5
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