MolNFT v1 · #167340 · protein
Klebsiella oxytoca npsa N-terminal subdomain in space group C2
6VHT · Npsa adenylation domain: “Klebsiella oxytoca npsa N-terminal subdomain in space group C2”. X-ray diffraction, 2 ligands (CL, BR), 2 pockets (best druggability 0.55). MolNFT v1 #167340 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6VHT
- Type
- protein
- Length
- 381 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Npsa adenylation domain
- UniProt
- A0A2U4DY99
- Ligands
- CL, BR
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Npsa adenylation domain | protein | 381 | 31% helix, 29% strand | A0A2U4DY99 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 249 | 0.55 | 0.77 | 45 | CL |
| 2 | 94 | 0.42 | 0.77 | 19 | empty |
Compared structures
- 6VHT · Klebsiella oxytoca NpsA N-terminal subdomain in space group C2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2U4DY99
- Elsewhere: RCSB PDB 6VHT · PDBe 6VHT · UniProt A0A2U4DY99
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