MolNFT v1 · #167267 · protein
Crystal structure of speg allosteric polyamine acetyltransferase from bacillus thuringiensis
6VFM · Spermidine N1-acetyltransferase: “Crystal structure of speg allosteric polyamine acetyltransferase from bacillus thuringiensis”. X-ray diffraction, 5 pockets (best druggability 0.74). MolNFT v1 #167267 on GenesisL1: 3D structure…
- PDB
- 6VFM
- Type
- protein
- Length
- 334 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spermidine N1-acetyltransferase
- UniProt
- F0PQY5
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Spermidine N1-acetyltransferase | protein | 167 | 35% helix, 40% strand | F0PQY5 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.74 | 0.98 | 17 | empty |
| 2 | 760 | 0.69 | 0.76 | 61 | empty |
| 3 | 625 | 0.68 | 0.77 | 46 | empty |
| 4 | 99 | 0.46 | 0.79 | 14 | empty |
| 5 | 141 | 0.42 | 0.75 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 692 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6VFM · Crystal structure of SpeG allosteric polyamine acetyltransferase from Bacillus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0PQY5
- Elsewhere: RCSB PDB 6VFM · PDBe 6VFM · UniProt F0PQY5
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