MolNFT v1 · #167213 · protein
Crystal structure of dehaloperoxidase B in complex with cofactor MANGANESE(III) porphyrin and substrate 4-nitrophenol
6VDW: “Crystal structure of dehaloperoxidase B in complex with cofactor MANGANESE(III) porphyrin and substrate…”. X-ray diffraction, 3 ligands (MNR, NPO, SO4). MolNFT v1 #167213 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VDW
- Type
- protein
- Length
- 274 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NAV7
- Ligands
- MNR, NPO, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 137 | — | Q9NAV7 |
Ligands and binding sites
- MNR · Protoporphyrin IX containing Mn · ligand · 2 copies · chains A, B
- NPO · P-nitrophenol · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains B
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VDW · Crystal Structure of Dehaloperoxidase B in Complex with cofactor Manganese(III) Porphyrin… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NAV7
- Elsewhere: RCSB PDB 6VDW · PDBe 6VDW · UniProt Q9NAV7
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