MolNFT v1 · #167209 · protein
Crystal structure of dehaloperoxidase B in complex with cofactor IRON(III) deuteroporphyrin IX and substrate 4-bromo-ortho-cresol
6VDS: “Crystal structure of dehaloperoxidase B in complex with cofactor IRON(III) deuteroporphyrin IX and substrate…”. X-ray diffraction, 3 ligands (FDE, MWJ, SO4). MolNFT v1 #167209 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6VDS
- Type
- protein
- Length
- 274 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NAV7
- Ligands
- FDE, MWJ, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 137 | — | Q9NAV7 |
Ligands and binding sites
- FDE · Fe(iii) deuteroporphyrin IX · ligand · 2 copies · chains A, B
- MWJ · 4-bromo-2-methylphenol · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VDS · Crystal Structure of Dehaloperoxidase B in Complex with cofactor Iron(III)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NAV7
- Elsewhere: RCSB PDB 6VDS · PDBe 6VDS · UniProt Q9NAV7
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