MolNFT v1 · #167162 · protein
Crystal structure of nitrosotalea devanaterra carotenoid cleavage dioxygenase in complex with 3-hydroxy-beta-apo-14'-carotenal
6VCH: “Crystal structure of nitrosotalea devanaterra carotenoid cleavage dioxygenase in complex with…”. X-ray diffraction, 4 ligands (QVM, CO, NA). MolNFT v1 #167162 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VCH
- Type
- protein
- Length
- 2,672 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A128A3G4
- Ligands
- QVM, CO, NA, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 453 | — | A0A128A3G4 |
| D | — | protein | 452 | — | A0A128A3G4 |
| E | — | protein | 431 | — | A0A128A3G4 |
| F | — | protein | 430 | — | A0A128A3G4 |
Ligands and binding sites
- QVM · (2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-5,9-dimethylundeca-2,4,6, 8,10-pentaenal · ligand · 4 copies · chains A, B, C, D
- CO · Cobalt (II) ion · metal · 6 copies · chains A, B, C, D, E, F
- NA · Sodium ion · metal · 2 copies · chains B, D, A, C
- CL · Chloride ion · ion · 2 copies · chains A, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VCH · Crystal structure of Nitrosotalea devanaterra carotenoid cleavage dioxygenase in complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A128A3G4
- Elsewhere: RCSB PDB 6VCH · PDBe 6VCH · UniProt A0A128A3G4
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