MolNFT v1 · #167112 · protein

HLA-B*15:01 complexed with a synthetic peptide

6VB3: “HLA-B*15:01 complexed with a synthetic peptide”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #167112 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6VB3
Type: protein
Length: 386 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: F4NBQ1, P61769
Ligands: NA

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	277	—	F4NBQ1
B	—	protein	100	—	P61769
C	—	protein	9	—	—

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A, B
EDO · 1,2-ethanediol · additive
ACT · Acetate ion · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6VB3 · HLA-B*15:01 complexed with a synthetic peptide · the same entry in another collection · chain C against C, TM-score 1.00
P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F4NBQ1
Every structure of UniProt P61769
Elsewhere: RCSB PDB 6VB3 · PDBe 6VB3 · UniProt F4NBQ1 · UniProt P61769

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