MolNFT v1 · #167080 · RNA
Solution structure of the tau pre-mRNA exon 10 splicing regulatory element bound to mip
6VA4 · RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*UP*GP*UP*G)-3'): “Solution structure of the tau pre-mRNA exon 10 splicing regulatory element bound to mip”. Solution nmr, 1 ligand (QSY). MolNFT v1 #167080 on GenesisL1: 3D structure, binding sites…
- PDB
- 6VA4
- Type
- RNA
- Length
- 21 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*UP*GP*UP*G)-3'); RNA…
- Ligands
- QSY
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*UP*GP*UP*G)-3') | rna | 11 | — | — |
| B | RNA (5'-R(*CP*AP*CP*AP*CP*GP*UP*CP*GP*G)-3') | rna | 10 | — | — |
Ligands and binding sites
- QSY · N-[3-(8-methoxy-4-oxo-4,5-dihydro-3H-pyrimido[5,4-b]indol-3-yl)propyl]-N-methylcyclohexanaminium · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 547 Ų buried · 51 hydrogen bonds · nucleic-nucleic
Compared structures
- 6VA4 · Solution Structure of the Tau pre-mRNA Exon 10 Splicing Regulatory Element Bound to MIP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6VA4 · PDBe 6VA4
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