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MolNFT v1 · #167060 · protein

Cryo-EM structure of CULLIN5 bound to ring-box protein 2 (CUL5-RBX2)

6V9I: “Cryo-EM structure of CULLIN5 bound to ring-box protein 2 (CUL5-RBX2)”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #167060 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6V9I
Type
protein
Length
814 residues
Chains
2
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P06654, Q93034, Q9WTZ1
Ligands
ZN

Structure

electron microscopy · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
C—protein730—P06654, Q93034
R—protein84—Q9WTZ1

Ligands and binding sites

  • ZN · Zinc ion · metal · 3 copies · chains R

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6V9I · cryo-EM structure of Cullin5 bound to RING-box protein 2 (Cul5-Rbx2) · the same entry in another collection · chain C against C, TM-score 1.00
  • Q93034 · AlphaFold monomer V2.0 prediction for cullin-5 (Q93034) · a predicted model of the same protein · chain C against A, TM-score 0.83
  • Q9WTZ1 · AlphaFold monomer V2.0 prediction for ring-box protein 2 (Q9WTZ1) · a predicted model of the same protein · chain R against A, TM-score 0.75
  • P06654 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein G (P06654) · a predicted model of the same protein · chain C against A, TM-score 0.18

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