MolNFT v1 · #1667 · protein

Malate dehydrogenase from aquaspirillum arcticum

1B8P · Protein (malate dehydrogenase): “Malate dehydrogenase from aquaspirillum arcticum”. X-ray diffraction, 1 pocket (best druggability 0.61). MolNFT v1 #1667 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1B8P
Type: protein
Length: 327 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (malate dehydrogenase)
UniProt: Q9ZF99
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (malate dehydrogenase)	protein	327	47% helix, 19% strand	Q9ZF99

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	442	0.61	0.76	52	empty

Compared structures

1B8P · Malate dehydrogenase from aquaspirillum arcticum · the same entry in another collection · chain A against A, TM-score 1.00
Q9ZF99 · AlphaFold monomer V2.0 prediction for malate dehydrogenase (Q9ZF99) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZF99
Elsewhere: RCSB PDB 1B8P · PDBe 1B8P · UniProt Q9ZF99

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