MolNFT v1 · #166675 · protein

Structure of V. metoecus nucc, trimer form

6UXG · Vibrio metoecus sp. RC341 nucc: “Structure of V. metoecus nucc, trimer form”. X-ray diffraction, 1 ligand (SO4), 7 pockets (best druggability 0.80). MolNFT v1 #166675 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6UXG
Type: protein
Length: 690 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Vibrio metoecus sp. RC341 nucc
Ligands: SO4
Pockets: 7 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Vibrio metoecus sp. RC341 nucc	protein	230	34% helix, 27% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 6 copies · chains A, C, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	896	0.80	0.82	71	empty
2	320	0.60	0.78	35	empty
3	356	0.60	0.77	44	empty
4	275	0.58	0.78	38	empty
5	101	0.38	0.76	18	empty

Interfaces

3 interfaces between chains.

B–C · 1402 Å² buried · 15 hydrogen bonds · protein-protein
A–B · 1396 Å² buried · 13 hydrogen bonds · protein-protein
A–C · 1385 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6UXG · Structure of V. metoecus NucC, trimer form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6UXG · PDBe 6UXG

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