MolNFT v1 · #166638 · protein
Crystal structure of apo atmm
6UWD · D-glucose O-methyltransferase: “Crystal structure of apo atmm”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.58). MolNFT v1 #166638 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UWD
- Type
- protein
- Length
- 257 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-glucose O-methyltransferase
- UniProt
- Q0H2W9
- Ligands
- MG
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-glucose O-methyltransferase | protein | 257 | 44% helix, 21% strand | Q0H2W9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 174 | 0.58 | 0.81 | 30 | MG |
| 2 | 73 | 0.53 | 0.86 | 23 | ACT |
| 3 | 164 | 0.52 | 0.79 | 35 | empty |
Compared structures
- 6UWD · Crystal structure of Apo AtmM · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0H2W9
- Elsewhere: RCSB PDB 6UWD · PDBe 6UWD · UniProt Q0H2W9
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