MolNFT v1 · #166419 · protein

Structure of apo trehalose-6-phosphate phosphatase from salmonella typhimurium

6UPB · Trehalose-phosphate phosphatase: “Structure of apo trehalose-6-phosphate phosphatase from salmonella typhimurium”. X-ray diffraction, 4 pockets (best druggability 0.79). MolNFT v1 #166419 on GenesisL1: 3D structure, binding sites…

PDB: 6UPB
Type: protein
Length: 492 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Trehalose-phosphate phosphatase
EC: 3.1.3.12
UniProt: E1WGG9
Pockets: 4 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Trehalose-phosphate phosphatase (EC 3.1.3.12)	protein	246	37% helix, 23% strand	E1WGG9

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	182	0.79	0.94	37	empty
2	267	0.78	0.91	39	empty
3	131	0.43	0.76	18	empty
4	71	0.33	0.75	20	empty

Interfaces

1 interface between chains.

A–B · 137 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

6UPB · Structure of apo trehalose-6-phosphate phosphatase from Salmonella typhimurium · the same entry in another collection · chain A against A, TM-score 1.00
E1WGG9 · AlphaFold monomer V2.0 prediction for trehalose-phosphate phosphatase (E1WGG9) · a predicted model of the same protein · chain A against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E1WGG9
Elsewhere: RCSB PDB 6UPB · PDBe 6UPB · UniProt E1WGG9

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