MolNFT v1 · #166408 · RNA
Structure of the mango-III fluorescent aptamer bound to YO3-biotin
6UP0: “Structure of the mango-III fluorescent aptamer bound to YO3-biotin”. X-ray diffraction, 3 ligands (YO3, MG, K). MolNFT v1 #166408 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UP0
- Type
- RNA
- Length
- 76 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- YO3, MG, K
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, D | — | rna | 38 | — | — |
Ligands and binding sites
- YO3 · YO3-biotin · ligand · 2 copies · chains C, D
- MG · Magnesium ion · metal · 6 copies · chains C, D
- K · Potassium ion · metal · 2 copies · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UP0 · Structure of the Mango-III fluorescent aptamer bound to YO3-Biotin · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6UP0 · PDBe 6UP0
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