MolNFT v1 · #166187 · protein
Structure of the cytoplasmic domain of the T3SS sorting platform protein psck from P. aeruginosa
6UIE · Type III export protein psck: “Structure of the cytoplasmic domain of the T3SS sorting platform protein psck from P. aeruginosa”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.64). MolNFT v1 #166187 on GenesisL1…
- PDB
- 6UIE
- Type
- protein
- Length
- 366 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type III export protein psck
- UniProt
- Q9I313
- Ligands
- CL
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 52% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type III export protein psck | protein | 187 | 52% helix, 0% strand | Q9I313 |
| B | Type III export protein psck | protein | 179 | 53% helix, 0% strand | Q9I313 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 492 | 0.64 | 0.76 | 47 | empty |
| 2 | 53 | 0.39 | 0.81 | 15 | empty |
| 3 | 57 | 0.36 | 0.79 | 13 | empty |
| 4 | 76 | 0.35 | 0.76 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 358 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 6UIE · Structure of the cytoplasmic domain of the T3SS sorting platform protein PscK from P.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I313
- Elsewhere: RCSB PDB 6UIE · PDBe 6UIE · UniProt Q9I313
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