MolNFT v1 · #166106 · protein
N2-bound nitrogenase mofe-protein from azotobacter vinelandii
6UG0: “N2-bound nitrogenase mofe-protein from azotobacter vinelandii”. X-ray diffraction, 8 ligands (HDZ, HCA, 1CL). MolNFT v1 #166106 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UG0
- Type
- protein
- Length
- 1,996 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07328, P07329
- Ligands
- HDZ, HCA, 1CL, ICE, ICZ, MO, FE, H2S
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 476 | — | P07328 |
| B, D | — | protein | 522 | — | P07329 |
Ligands and binding sites
- HDZ · Nitrogen molecule · ligand · 3 copies · chains A, C
- HCA · 3-hydroxy-3-carboxy-adipic acid · ligand · 2 copies · chains A, C
- 1CL · FE(8)-S(7) cluster, oxidized · ligand · 2 copies · chains A, B, C, D
- ICE · iron-sulfur-molybdenum cluster with interstitial carbon · ligand · chains A
- ICZ · iron-sulfur-molybdenum cluster with interstitial carbon · ligand · chains C
- MO · Molybdenum atom · metal · 8 copies · chains A, B, C, D
- FE · Fe (III) ion · metal · 2 copies · chains B, D
- H2S · Hydrosulfuric acid · ion · 6 copies · chains A, B, C, D
- GOL · Glycerol · additive · 6 copies · chains B, C, D, A
- PGE · Triethylene glycol · additive · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6UG0 · N2-bound Nitrogenase MoFe-protein from Azotobacter vinelandii · the same entry in another collection · chain A against A, TM-score 1.00
- P07328 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein alpha chain… · a predicted model of the same protein · chain A against A, TM-score 1.00
- P07329 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein beta chain… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07328
- Every structure of UniProt P07329
- Elsewhere: RCSB PDB 6UG0 · PDBe 6UG0 · UniProt P07328 · UniProt P07329
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