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MolNFT v1 · #166050 · DNA

Crystal structure of a self-assembling DNA scaffold containing sequence modifications to attempt to disrupt crystal contacts in a rhombohedral lattice.

6UEF · DNA (5'- D(*CP*AP*AP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*…: “Crystal structure of a self-assembling DNA scaffold containing sequence modifications to attempt to disrupt…”. X-ray diffraction. MolNFT v1 #166050 on GenesisL1: 3D…

PDB
6UEF
Type
DNA
Length
42 nucleotides
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA (5'- D(*CP*AP*AP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*TP*CP*GP*GP*A)- 3'); DNA…

Structure

x-ray diffraction · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
BDNA (5'- D(*CP*AP*AP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*TP*CP*GP*GP*A)- 3')dna21——
ADNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3')dna7——
CDNA (5'-D(*TP*GP*TP*CP*CP*GP*AP*TP*G)-3')dna9——
DDNA (5'-D(P*GP*TP*CP*AP*T)-3')dna5——

Interfaces

5 interfaces between chains.

  • B–C · 336 Ų buried · 23 hydrogen bonds · nucleic-nucleic
  • B–A · 328 Ų buried · 30 hydrogen bonds · nucleic-nucleic
  • B–D · 256 Ų buried · 27 hydrogen bonds · nucleic-nucleic
  • A–C · 108 Ų buried · 3 hydrogen bonds · nucleic-nucleic
  • A–D · 103 Ų buried · 1 hydrogen bond · nucleic-nucleic

Compared structures

  • 6UEF · Crystal Structure of a Self-Assembling DNA Scaffold Containing Sequence Modifications to… · the same entry in another collection · chain B against B, TM-score 1.00

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