MolNFT v1 · #165947 · protein
Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from aureobasidium namibiae (ANGH128_VI) in complex with laminaritriose
6UBA · GLYCO_HYDRO_CC domain-containing protein: “Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from aureobasidium namibiae (ANGH128_VI) in…”. X-ray diffraction, 1 ligand (BGC), 20 pockets (best druggability 0.83).…
- PDB
- 6UBA
- Type
- protein
- Length
- 2,471 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLYCO_HYDRO_CC domain-containing protein
- UniProt
- A0A074W9U7
- Ligands
- BGC
- Pockets
- 20 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, F, G, H, I, J | GLYCO_HYDRO_CC domain-containing protein | protein | 247 | 40% helix, 18% strand | A0A074W9U7 |
| E | GLYCO_HYDRO_CC domain-containing protein | protein | 248 | 40% helix, 18% strand | A0A074W9U7 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 49 copies · chains A, B, C, D, E, F, G, H, I, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 767 | 0.83 | 0.86 | 101 | empty |
| 2 | 456 | 0.77 | 0.85 | 60 | empty |
| 3 | 659 | 0.76 | 0.82 | 78 | empty |
| 4 | 652 | 0.66 | 0.76 | 58 | empty |
| 5 | 666 | 0.65 | 0.74 | 57 | BGC |
Interfaces
17 interfaces between chains.
- A–I · 1082 Ų buried · 10 hydrogen bonds · protein-protein
- B–H · 1039 Ų buried · 9 hydrogen bonds · protein-protein
- D–E · 1023 Ų buried · 8 hydrogen bonds · protein-protein
- E–H · 703 Ų buried · 10 hydrogen bonds · protein-protein
- C–G · 653 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6UBA · Crystal structure of a GH128 (subgroup VI) exo-beta-1,3-glucanase from Aureobasidium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A074W9U7
- Elsewhere: RCSB PDB 6UBA · PDBe 6UBA · UniProt A0A074W9U7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.