MolNFT v1 · #165922 · DNA
A self-assembling DNA crystal scaffold with cavities containing 3 helical turns per edge
6UAL · DNA (32-mer): “A self-assembling DNA crystal scaffold with cavities containing 3 helical turns per edge”. X-ray diffraction. MolNFT v1 #165922 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6UAL
- Type
- DNA
- Length
- 64 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (32-mer); DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3'); DNA (5'-D(P*GP*TP*CP*AP*G)-3'); DNA…
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | DNA (32-mer) | dna | 32 | — | — |
| C | DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3') | dna | 7 | — | — |
| D | DNA (5'-D(P*GP*TP*CP*AP*G)-3') | dna | 5 | — | — |
| A | DNA (5'- D(*TP*GP*GP*AP*AP*AP*CP*AP*GP*AP*CP*TP*GP*TP*CP*AP*GP*AP*TP*G)-3') | dna | 20 | — | — |
Interfaces
5 interfaces between chains.
- B–A · 748 Ų buried · 35 hydrogen bonds · nucleic-nucleic
- B–C · 309 Ų buried · 14 hydrogen bonds · nucleic-nucleic
- B–D · 227 Ų buried · 9 hydrogen bonds · nucleic-nucleic
- C–D · 111 Ų buried · 5 hydrogen bonds · nucleic-nucleic
- C–A · 98 Ų buried · 4 hydrogen bonds · nucleic-nucleic
Compared structures
- 6UAL · A Self-Assembling DNA Crystal Scaffold with Cavities Containing 3 Helical Turns per Edge · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6UAL · PDBe 6UAL
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