MolNFT v1 · #165825 · protein
HIV-1 wild type protease with grl-00819A, with phenyl-boronic-acid as P2'-ligand and with a 6-5-5-ring fused crown-like tetrahydropyranofuran as the P2-ligand
6U7O: “HIV-1 wild type protease with grl-00819A, with phenyl-boronic-acid as P2'-ligand and with a 6-5-5-ring fused…”. X-ray diffraction, 3 ligands (Q1D, NA, CL). MolNFT v1 #165825 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6U7O
- Type
- protein
- Length
- 198 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5RZ08
- Ligands
- Q1D, NA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 99 | — | Q5RZ08 |
Ligands and binding sites
- Q1D · {4-[{(2R,3S)-3-[({[(3s,3ar,5r,7as,8s)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl]oxy}carbonyl)amino]-2-hydroxy-4-phenylbutyl}(2-methylpropyl) sulfamoyl]phenyl}boronic acid · ligand · chains A, B
- NA · Sodium ion · metal · chains A
- CL · Chloride ion · ion · 4 copies · chains A, B
- FMT · Formic acid · additive · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6U7O · HIV-1 wild type protease with GRL-00819A, with phenyl-boronic-acid as P2'-ligand and with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5RZ08
- Elsewhere: RCSB PDB 6U7O · PDBe 6U7O · UniProt Q5RZ08
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