MolNFT v1 · #165824 · protein
Crystal structure of neurotrimin (ntm)
6U7N: “Crystal structure of neurotrimin (ntm)”. X-ray diffraction, 4 ligands (NAG, BMA, FUC), 1 pocket (best druggability 0.37). MolNFT v1 #165824 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6U7N
- Type
- protein
- Length
- 256 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Neurotrimin
- UniProt
- Q9P121
- Ligands
- NAG, BMA, FUC, CL
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Neurotrimin | protein | 256 | 1% helix, 59% strand | Q9P121 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- BMA · beta-D-mannopyranose · sugar · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
- CL · Chloride ion · ion · 8 copies · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 108 | 0.37 | 0.74 | 19 | empty |
Modifications
Observed in the structure: 2 disulfide, 2 glycan (disulfide, N-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9P121
- Elsewhere: RCSB PDB 6U7N · PDBe 6U7N · UniProt Q9P121
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