MolNFT v1 · #165799 · protein + DNA
Human SAMHD1 bound to DEOXYRIBO(C*G*C*C*T)-oligonucleotide
6U6X: “Human SAMHD1 bound to DEOXYRIBO(C*G*C*C*T)-oligonucleotide”. X-ray diffraction, 2 ligands (SC, ZN). MolNFT v1 #165799 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6U6X
- Type
- protein + DNA
- Length
- 1,631 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Y3Z3
- Ligands
- SC, ZN
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 427 | — | Q9Y3Z3 |
| B | — | protein | 383 | — | Q9Y3Z3 |
| C | — | protein | 376 | — | Q9Y3Z3 |
| D | — | protein | 430 | — | Q9Y3Z3 |
| E, F, H | — | dna | 4 | — | — |
| G | — | dna | 3 | — | — |
Ligands and binding sites
- SC · 2-deoxy-cytidine-5'-thiophosphorate · ligand · chains B, C, G
- ZN · Zinc ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6U6X · Human SAMHD1 bound to deoxyribo(C*G*C*C*T)-oligonucleotide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y3Z3
- Elsewhere: RCSB PDB 6U6X · PDBe 6U6X · UniProt Q9Y3Z3
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