MolNFT v1 · #165718 · protein
Wbbm bifunctional glycosytransferase apo structure
6U4B · Wbbm protein: “Wbbm bifunctional glycosytransferase apo structure”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.65). MolNFT v1 #165718 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6U4B
- Type
- protein
- Length
- 570 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Wbbm protein
- UniProt
- Q48484
- Ligands
- MG
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Wbbm protein | protein | 570 | 42% helix, 18% strand | Q48484 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 468 | 0.65 | 0.77 | 57 | empty |
| 2 | 356 | 0.57 | 0.75 | 38 | empty |
Compared structures
- 6U4B · WbbM bifunctional glycosytransferase apo structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q48484
- Elsewhere: RCSB PDB 6U4B · PDBe 6U4B · UniProt Q48484
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